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November 4, 2008

I feel like a democrat.

I always prefer going to vote on Election Day rather than mailing in a ballot. There's something about standing in the booth and marking on the paper that makes me feel like my vote really counts. Voting is one of my favorite rituals, a rite of secular democracies that is open to all citizens, where participation allows you to help decide the future and meet your neighbors. It's great.

This year is the first year that I've ever had to wait in line to vote, and I wait I did, for almost an hour this morning. I cast my vote for Obama, and while I am cautiously optimistic, I am also nervous as hell.

Here's to hoping that America makes the best decision today; may we finally shake up the Republican party and its openly hostile anti-intellectual tendencies.

April 10, 2008

Jeff Gore on The Colbert Report

I must admit, I never saw this coming. Jeff Gore, a former lab member, was interviewed by Stephen Colbert last night about retiring the penny.

Jeff is the 'most outspoken member' of Citizens for Retiring the Penny. Below is the segment from the show:

April 2, 2008

The ribosome has left the building

Getting the cover of a journal like Nature is a little bit like winning the scientific lottery. So we're very proud:

Congratulations all around, especially to Jin-Der, who has done a fantastic job of making this project work. Although we were the first to observe ribosome activity in real-time, there is so much yet to come!

September 20, 2007

Vivisection at Berkeley: Protest all life sciences!

Recently, a group of student-organized protesters picketed on-campus and outside the Helen Wills 10th anniversary symposium. The Helen Wills Institute is a neuroscience institute with affiliated labs on the Berkeley campus. Most of the animal protesters wore bandanas over their faces and carried signs like "vivisection kills" and wrote on the sidewalks phrases like "animals die while demons rejoice." I have come to the conclusion that protesting like this is an unhelpful contribution to on-campus activism as well as a distraction from a fruitful animal-research debate.

Continue reading "Vivisection at Berkeley: Protest all life sciences!" »

July 20, 2007

Rattle rattle kah-boom rattle rattle

The lady and I (along with about a million other people in the East Bay) were awakened at 4:42 this morning by an earthquake. Although we've experienced one other magnitude 4.2 temblor before, this one seemed especially jarring.

For one, the way this one shook made it feel especially powerful. At our place, there were little rumbles before and after, but most of the energy was in one high-amplitude wave that hit all at once. The best part was riding the house, because it felt like an underdamped spring that kept "ringing" as the wave decayed down. It rattled the liquor bottles (they were safe though, phew!), and torqued the whole house. It was the first time I've experience the house being torqued; luckily 1908 all-wood construction is strong but giving, making it great for absorbing a lot of the energy of the quake.

It's comforting to know that it was the Hayward fault that slipped. It runs about 100 yards from where I work... awesome!

Also, our local Safeway (about which I've written before) had two of its windows broken. Luckily, the Chronicle is there with the photos.

UPDATE: The Chronicle has more on the quake, including why it felt so strong in Berkeley.

July 12, 2007

Interesting people 'round these parts

Saw David Gergen tonight, eating dinner at the table next to us. I didn't notice him, but Carlos recognized him from NewsHour with Jim Lehrer.

Weird.

June 14, 2007

What will happen to Berkeley???

Not so sure that this is a good idea:

Among the activities that will be banned are smoking near buildings in commercial areas, lying on the sidewalk, public urination and defecation, drinking in public, possessing a shopping cart and shouting in public.

I'm also not convinced that a city can ban shouting in public; aren't there First Amendment issues with banning loud speech?

UPDATE: More here.

June 5, 2007

Allan Stokke is not a monster

Feministing.com has a rather disingenuous post about Allan Stokke, father of Alison Stokke:

After we posted a link to the story about Alison Stokke, the high-school track athlete who has been unwillingly turned into an internet sex object, sharp-eyed reader Evan emailed with the observation that Stokke's father is the same guy who earlier this year defended a cop who jerked off on a stripper during a routine traffic stop. “She got what she wanted,” Al Stokke said, of the stripper. “She’s an overtly sexual person.”

I'm not going to defend his words, because I totally disagree with them. But Feministing is entirely unfair to the man. Importantly, he is a defense attorney. He has a job, and his job is to defend people in a court of law. We cannot use his words in the context of defending the accused as a window into his own personal thinking. Defense attorneys are a necessary component of the legal system, as every accused person deserves representation before the courts in our country. Once hired as counsel, he has a moral responsibility to defend his client to the best of his abilities. It is simply not his job to decide the guilt or innocence of his client—rather, this responsibility is given to the juror-peers of the accused in our legal system.

The final few thoughts from the blog are given below:

From his previous comments, he seems to desire a world in which reprehensible treatment of women (sexual assault, harassment, rape) is a-OK. But maybe, just maybe, his views will change now that he is forced to consider the fact that his own flesh and blood -- his wife, his sister, his mother, his daughter -- could be a victim of that violence.

Simply because Allan Stokke has defended criminals in the court doesn't mean that he sides with them. Such a vicious and personal ad hominem attack against a defense attorney shows a sad misunderstanding of the judicial system.

UPDATE: Allison Stokke is a freshman here at Berkeley.

May 5, 2007

Quote of the day: May 5, 2007

Matt Taecker, Chief Downtown Planner, Berkeley:

"If you want a cheap diaper, go to Costco," he said. "If you want an authentic urban experience, come to downtown Berkeley."

More here.

UPDATE 2007-05-15: A followup, which includes photos, is here.

April 23, 2007

South Indian food with Aathi (or, "Cooking with Communists")

Yesterday, the lady and I made the long, three-block trek to Aathi's place to learn how to make South Indian food... there were about six of us, and we each made a little something, everything from scratch:

  • Potato podimaas (spicy potatoes with curry leaves, mustard seeds and fried daal)
  • Palak paneer with homemade paneer made just the previous night
  • Rajma masala (kidney beans with onions, tomatoes and lots of spices
  • Yellow pepper, plantain, eggplant and potato bajji (spicy fritters)
  • Chappathi (puffed wheat breads)
  • Vermicelli payasam (spiced vermicelli pudding for dessert)

Delicious! Who knew cooking Indian food could be so much fun?

Click here to see the photos!

UPDATE: Aathi sends a poem from the Indian poet Rabindranath Tagore. We were discussing politics, and decided this poem was especially profound given the state of things abroad and at home:

My Country Awake

Where the mind is without fear and the head held high;
Where knowledge is free;
Where the world has not been broken up into fragments by narrow domestic walls;
Where words come out from the depth of truth;
Where tireless striving stretches its arms towards perfection;
Where the clear stream of reason has not lost its way into the dreary desert sand of dead habit;
Where the mind is led forward by Thee into ever-widening thought and action;
Into that heaven of freedom, my Father, let my country awake.

—Rabindranath Tagore

April 12, 2007

Tilden Sunset Hike, Mar 31 2007

Two weekends ago, we went for a quick hike in Tilden after a Sunday barbecue. Tilden Regional Park is all of 2.5 miles from our house (1.8 miles from campus). One of our "standard hikes" starts near Inspiration Point; it's less than a mile long, and brings you to several great views.

Check out my photos of the hike — first we look west towards Golden Gate Bridge and SF, and then face northwest to watch the sun set over the Marin Headlands and Mount Tamalpais. The white horizontal line behind Golden Gate Bridge is the fog rolling in from the Pacific.

One of the nicest things about Berkeley is its proximity to these beautiful natural areas. We don't take advantage of it often enough...

March 13, 2007

Kites at the Marina!

Last Sunday, the lady and I decided not to be stuck inside on such a beautiful day. So we went to Popeye's and got some good ol' fried chicken and some butterflied shrimp and took ourselves out to the Berkeley Marina. There's this great set of hills in Cesar Chavez park in the Marina (which are the highest point for miles) where people often go to fly kites, so we brought a blanket up the hill and had a nice little fried chicken and shrimp picnic.

I took some photos of the crazy kites. You may see them by clicking here. The octopus kites really freaked me out when we first arrived. At first, the signal in my head was "IMMINENT DANGER; RETURN HOME," but upon further inspection, they were quite friendly and even somewhat happy.

In several of the photos, you can see the Great City of San Francisco in the distance past the bay. In one, you can also enjoy our view of the Golden Gate Bridge and the Marin headlands. I turned around and took a shot of the city of Berkeley (facing back into the hills); the University's campanile appears somewhere in the bottom right of that photo. It's the vertical white thing, and both labs I work in are quite near to it. Hope you enjoy!

February 1, 2007

USD 500M for energy biosciences at Berkeley

I got this email 27 minutes ago from Robert Birgeneau, our Chancellor:

Colleagues, students, and friends:

I am proud and excited to tell you that a partnership led by UC Berkeley has been selected to receive an unprecedented $500 million from global energy firm BP to lead the way in research to develop new, clean, renewable sources of energy. With this remarkable support, the work Berkeley will undertake will be transformative for our nation and, indeed, our planet.

The campus will partner with Lawrence Berkeley National Laboratory and the University of Illinois at Urbana-Champaign in this 10-year effort, which was announced this morning at a campus press conference by Robert A. Malone, chairman and president of BP America Inc., along with Gov. Arnold Schwarzenegger and Illinois Gov. Rod Blagojevich.

This new research effort -- the Energy Biosciences Institute (EBI) -- will focus initially on biotechnology to produce biofuels, that is, transportation fuels that are made from plants. Berkeley and its partners will bring the most creative science, innovative technologies, and astute understanding of social sciences to bear to develop viable solutions to global energy challenges, among the most fundamental problems facing us today.

[...]

First thought: holy crap that's a lot of money (second thought: wow, BP is actually putting its money where its mouth is). I think this is fantastic news, not only for Berkeley, but also for energy research in general. For more information about this rather unprecedented research partnership, see here and here.

UPDATE: This article in the SF Chronicle more succinctly lays out what this all means.

January 27, 2007

My foggy walk to campus

This morning, I went to help my undergrad, M.S., grow up some cells in lab. He's growing yeast core histone proteins in E. coli. It was still foggy, so I took a few photos with the trusty cell phone during my walk from home to lab. I apologize for the quality, but some of them turned out fairly decent.

Here they are, in all their glory. Enjoy. Any given morning, other than the distinct lack of people walking around. Thanks, Saturday.

December 20, 2006

Don't worry: I'm still alive

Rumors of my death have been highly exaggerated.

Today, however, I did survive a magnitude 3.7 earthquake centered two miles from me, while I was in the second basement of a laboratory building. That's always cool.

Compared to the last one, I gotta say being two stories underground during an earthquake really does feel safer. That's not at all intuitive to me...

UPDATE: Wow, another one last night that shook the house pretty well, this one registering at 3.5 magnitude. We're now at three for the week... that has to be a record or something.

October 30, 2006

Berkeley is one of THOSE towns (where the neighbors are all activists)

I thought I would link to an article in today's SF Chronicle about the brou-ha-ha in Berkeley over a proposed construction project (one that, incidentally, involves my favorite market, Trader Joe's):

In a city famous for its love of specialty gourmet food, irate neighbors are fighting a new Trader Joe's slated for University Avenue and Martin Luther King Jr. Way, now home to a Kragen outlet.

Residents are concerned about traffic, parking, the building blending in with the neighborhood, and the large volume of low-cost alcohol for sale just a few blocks from the UC campus, Berkeley High School and a number of homeless service agencies.

Based purely on aesthetic concerns, I am very much in favor of the new project. It is probably too big for the site though, and wish it could be scaled down smaller. The proposed building would replace a very tiny strip mall that has a large parking lot plopped down in the corner of the lot. The parking lot completely destroys the corner of that intersection.

But I also understand the neighbors' (ahem, my neighbors') concerns... I live just one block north of the top of the map there, and I would worry about my quiet victorian house with a small backyard having to sit next to a thriving retail center. I know there is a tendency to assume that cities want the extra tax revenue and therefore always favor business in these situations, but is this true?

How do cities typically confront these issues in a fair, legitimate way?

UPDATE: For the record, my house is really where the "d" is in "Trader Joe's" on the map. Not that it really matters.

October 15, 2006

Representin' Hildebrand on UNIX

There's a program on most UNIX computers called 'fortune'. It's typically run when a user logs in, giving them a random witty quote or nerdy joke, etc. When I opened Terminal on my Mac just a few minutes ago, I got this one:

Very few people do anything creative after the age of thirty-five. The reason is that very few people do anything creative before the age of thirty-five.
— Joel Hildebrand

Pretty clever, and it's also from the guy who is the namesake for my lab's building. We have a lot of his awards on the first floor of Hildebrand Hall, also one of his textbooks, introduction to Who's Who, and other sundry nick-nacks. Hildebrand was a physical chemist, and was a hotshot with mixtures. He discovered all sorts of things about spectral properties of iodine solutions and general properties of solubility in so-called "regular" mixtures, a term he coined.

One of his more practical contributions was his advocacy of using helium-oxygen mixtures for deep underwater dives. His knowledge of solubility of gas mixtures led him to believe that helium would remain soluble in the body (unlike nitrogen, which formed bubbles). His hypothesis was tested and found to mitigate Caisson disease (a.k.a. decompression sickness or "the bends").

Pretty cool stuff, and another reason basic research should be well-funded—it's impossible to anticipate where important breakthroughs will happen next.

October 3, 2006

Print off another 'NL' parking permit, we have ourselves a winner!

The University of California has its hands all over the Nobels this year, in one way or another. Today it was announced that George Smoot of the Department of Physics here at Berkeley has won the Nobel Prize in Physics for astrophysical work examining the residual blackbody radiation from the early universe. It turns out his co-recipient, John Mather, also did his graduate work here at UC(†). From the press release:

Smoot, a resident of Berkeley, was surprised by an early morning call from Sweden to his unlisted cell phone, which the Nobel committee obtained by waking his neighbor.

"There were no rumors. I figured they only give the prize when you're close to death, and I still have enough life left in me," said Smoot, 61.

This marks the twentieth Nobel Prize awarded to Berkeley faculty, and the eighth given to faculty in the Physics Department. Around Birge and Le Conte Halls, we have lots of parking spaces marked 'NL' (these are the ones allocated to the Nobel Laureates). Looks like they'll have to clear off a handicapped spot to make room for the new bigshot.

(†) Let us not forget Andy Fire, who won yesterday for Medicine, and who is also a Berkeley alumn.

UPDATE: I almost missed this part of the press release:

In the finest tradition of Berkeley Nobelists, George is also a dedicated teacher. In addition to working with his graduate students, he currently sponsors undergraduate researchers in his lab and this semester is teaching Physics 7B, the introductory course for science and engineering majors.

Must be a heady feeling to walk into your first class as an undergrad only to find that your lecturer was just awarded the Nobel Prize in Physics that morning.

PHOTO UPDATE: The Department of Physics just held a reception in honor of Smoot's Nobel. I was standing just behind Berkeley's Chancellor Robert Birgeneau and George Smoot during the toast, so look for my bright shining face tomorrow on the Berkeley website. I also managed to snap a couple photos on the trusty camera-phone. Below, see George Smoot and 1997 laureate Steven Chu, respectively:

August 20, 2006

Trend I most hope catches on: eco packaging

Yesterday, Giao and I stopped by our local Elephant Pharmacy. Elephant is sort of like the Trader Joe's of pharmacies, except no small-molecule prescriptions of any kind are dispensed (they do have Chinese medicines and yoga/wellbeing courses). It's sort of where you'd imagine the hippy/co-op types go when they want to "reinvent themselves."

But much like Trader Joe's, I can't walk by it without going in and seeing what's inside. When we stepped in yesterday, we walked by the fruits 'n veggies first (noting the supremely ripe melon smell... it is melon season, turns out), and then I followed Giao to the boutique soaps section. I immediately noticed a new brand — called Pangaea Organics. OMfG. The product is pretty cool: your standard exotic/organic incredibly aromatic heavenly bar soap. Very nice. BUT THE PACKAGING... they package the bar soaps with the best packaging I've ever seen. It's a simple recycled-egg-carton style clamshell with a single layer of cardstock wrapper with the logo/UPC/etc. So sustainable it hurts. But moreso, so modern. It's such a cool look, and it's so eco friendly. I hope more companies buy into this type of packaging.

Pangaea claims that the packaging starts to decompose within 48 hrs, which I believe. I've also come to find out that IDEO had something to do with their packaging. Nice work, fellas.

As Paris would say, pretty hot.

July 18, 2006

Holy friggin' crap, I'm literally swimming in the World's Best Food

Well I'll be damned. I stumbled across the Wikipedia entry that lists the top 50 world restaurants according to Restaurant Magazine. It turns out I've been a few times to what is supposedly one of the world's best restaurants.... EVER.

Yes, apparently Alice Waters' Chez Panisse is holding at number 20, and I should say it's well deserved (although personally, I've never been quite as delighted at C.P. as when I go next door, to César, and it isn't on the list... so there you go). I've heard much about French Laundry, up in Napa; it's rockin' out at the fourth-best restaurant in the world on this list. Maybe Giao and I should give it a shot? You know, because I've always wanted to drop 420 bones on a 4-hour meal.

Maybe after grad school...

UPDATE: After seeing this guy's detailed photodocumentary of his trip to French Laundry, I think I have no choice but to go. In the mean time, I can only dream about how good sous-vide lobster tail must be... oh, mama.

July 13, 2006

Oh, to be in Lebanon right now...

My friend, Eric, left a week ago to go to a friend's wedding somewhere outside Beirut; he is scheduled to fly back to California sometime in the next few days. I remember he was going to be flying through Cyprus on the way back, but I'm not sure if he was planning on flying out of Beirut directly, or if he was planning leaving through Israel. Hopefully he wasn't planning on flying out of Hariri International in Beirut... anyhow, here's to his safety.

UPDATE: Eric sends via email, "we flew OUT of beirut 3 days ago and consider ourselves very lucky!!!" Lucky bastard.

July 8, 2006

This woman belongs in Berkeley

This article says the woman is from Walnut Creek, but I swear I saw her on Telegraph Ave the other day:

Outsiders who imagine the "typical" Berkeley resident probably think of someone who looks a lot like this crazy lady. That image is not far off...

UPDATE: This photo was picked up by Fark.com for a Photoshop contest! Perfect.

June 30, 2006

Follow-up: Michael Pollan helps change Whole Foods

Michael Pollan (writer for the New York Times, author of The Omnivore's Dilemma, and Professor of Journalism here at Berkeley) has been engaging Whole Food's CEO John Mackey in a blog-based debate about Pollan's portrayal of Whole Foods in The Omnivore's Dilemma.

In the book and in public talks, Pollan basically suggests that Whole Foods, while an overall improvement on the supermarket experience, sometimes "pretties up" the image of organics without really staying true to what organic foods are all about. In a nutshell, Pollan contended that Whole Foods sells foods that meet the bare minimum standard for organics and yet aren't really what people would think about as organic. As an example, he cited a story in the talk here at Berkeley about free-range organic chickens who were given the required opportunity to pasture access, and yet, because of the design of their coops and their unfamiliarity with open land, often chose not to spend any time out in it. For all intents and purposes, these chickens didn't live lives that customers would reasonably expect from "free-range, organic" chickens.

Pollan also criticized Whole Foods for not working to educate its customers about the social benefits, energy savings, and improved freshness associated with locally grown foods.

Anyhow, I wanted to follow up, because AS IT TURNS OUT, Whole Foods' CEO John Mackey listened, and has instituted an awesome and passionate five-point commitment to address Pollan's concerns. A teaser:

We've hired our first animal compassionate field buyer, Andrew Gunther, who is going to work exclusively on developing sources of animal products that meet our new strict animal compassionate standards...

Whole Foods Market is changing the job responsibilities of our Regional Buyers to focus more on sourcing local products for their stores...

Beginning soon, many of our markets where we have stand-alone stores (no other retailers sharing our parking lots) will close off major sections of the parking lots on Sunday to provide a place for local farmers to sell their products directly to customers. [emphasis mine]

Go read the whole thing!

June 13, 2006

Supporting (very) young scientists

This is pretty cool. Thanks, HHMI.

May 24, 2006

David Lebovitz writes my new favorite blog about food

Through Treehugger, I stumbled across my new favorite food blog. David Lebovitz is, as Treehugger says, "a Paris transplant who spent years at the forefront of the US' local, organic movement as a pastry chef at Berkeley's Chez Panisse." His blog centers around his life in Paris, and many of his blog entries are unabashedly gastronomical in content.

In particular, this entry about organic foods in France caught my attention. Check out his photos of the delicate wild asparagus, real earthy carrots and the intensely purple kohlrabi. They're all gorgeous, and when you compare them to conventional produce, it's not hard to guess which one you'd prefer. I suspect that the reason the food looks so much more appetizing (even raw) is because it was picked closer to ripeness because it only had to travel a short distance from farm to market. You won't see food look like that at Whole Foods no matter how hard you try; you can only get access to foods like that through farmers' markets (or CSA programs... the food pictured has a similar "look" to the produce we have delivered every Wednesday from Full Belly Farm in Guinda, CA).

Lebovitz's blog is now on my short list... nice work, David.

May 23, 2006

An Inconvenient Truth: Al Gore is still kicking

Even though An Inconvenient Truth opens tomorrow in L.A. and New York, a lucky few of us here at Berkeley got an advanced screening of it tonight as part of the China - U.S. Climate Conference on campus. Al Gore was originally scheduled to speak in person, but sent an advanced copy of the film for us to see because he was unable to make it.

Although I haven't had time to fact-check, and I still need to let all the proverbial juices mellow, my first impression was "wow."

The movie was not so much a documentary in the style of Michael Moore, but rather, it was more like going to hear a very entertaining speaker. Gore is still goofy-doofus Dr. Namedropper, but once you learn to see past his not-terribly-likeable persona and actually listen to what he's saying (and realize that planet-wide changes are happening), it's pretty eye-opening. Even as a scientist, it's hard to pay attention to all the current geophysical research—I look through Science and Nature all the time where these articles are published, and it's overwhelming trying to piece it all together—nevertheless, Gore does a pretty good job of placing it all together into a good narrative... one that is very thought-provoking.

It's a powerful, powerful film, devoid of obvious hyperbole and I would recommend in a heartbeat for everyone I know to see it on opening weekend in your area. You can find out when and where it opens by going to the movie's website.

UPDATE: Man, Fox News is just out of control.

UPDATE: Grist blows away my review. Now, forget what you just read, and read this instead.

May 10, 2006

No more Codys, no more books, no more teacher's derrrty looks...

Rumor has it that Cody's Bookstore on Telegraph will soon be closing. Normally, I'm kinda free-market about stores closing down — "hey, if nobody wants what they're selling, big deal" — but Cody's really is a particular loss for the south side of campus.

I've purchased many a book there, including C. P. Snow's The Two Cultures. Cody's tends to carry many books you can't find in mass-market bookstores (which brings me to a rant about mass-market bookstores only carrying books printed in the last two years — what's up with that? It's impossible to find well-known "real" books at chain bookstores, high school required reading notwithstanding).

Plus, Cody's had actual cool people come visit the store. I'll never forget seeing President Bill Clinton during his book signing visit to Cody's two years ago on June 29. In fact, my buddy in lab asked Clinton that day if he wanted to join him for a beer after the signing. He says Clinton looked up at him and appeared geniunely remorseful when he told him that he'd love to, except that he had a scheduled event after the book signing. He still belives Clinton really wanted to join him, which is a testament either to Bill's cunning ability to play to people's personalities, or his disarming lack of hubris.

All of these thoughts and memories associated with a bookstore I've known less than three years. I'll miss Cody's.

May 8, 2006

OMG OMG D-LIST CELEBRITY ALERT LOL

I totally walked past Michael Pollan today at the dry cleaners between my house and campus. He was all like talking on his cell phone... I bet he chatting up his publicist about his photo on the NYT front page:

omg omg

I totally use the same dry cleaner as a D-list celebrity. Awesome.

April 19, 2006

Michael Pollan, NPR, and biodiversity

The other day, I came home early and caught a bit of "Fresh Air" on NPR. Terry Gross was interviewing Michael Pollan, faculty here at Berkeley and author of the recent book, The Omnivore's Dilemma.

Pollan's book explores four meals, and examines the ecological/commercial/cultural/industrial impact of these meals. One recurring theme is our current dependence on monocultures for food production. In particular, Pollan highlights corn as a food that finds its way into virtually everything we eat (you could eat corn flakes for breakfast, with milk from cows raised on corn; a typical fast-food meal will have high-fructose corn syrup in the soda, more corn syrups and starches in the french fries, corn starch and corn-based binders in the chicken nuggets, plus all the feed corn that went into raising the chickens that eventually became the nuggets, etc.). Pollan also manages to weave it together into a fascinating narrative.

I would encourage you to listen to Pollan's interview on Fresh Air.

He also gave a recent talk here on campus (which of course I attended). He was hosted by Davia Nelson (one-half of NPR's "Kitchen Sisters" and also faculty here at Berkeley), and gave a more extended discussion of the book. One of the take-home messages was that we are strangling biodiversity on farms by growing field after field after field of single species. He pointed out that while this agricultural strategy is wildly successful in terms of feeding people, it is a huge burden on the local ecology. One recommendation is to encourage local farmers to grow a variety of different foods by patronizing farmer's markets or by participating in CSA (community-supported agriculture) groups. This gives farmers a financial incentive to continue growing a variety of foods for a local community, rather than selling one specific food product to large-volume industrial purchasers.

Supporting this type of agricultural (and therefore biological) diversity also strengthens the resilience of our nation's food supply. To put things in perspective, European wine grapes were decimated in the 1850's by phylloxera, and blight destroyed the Irish potato about the same time. While the French didn't need wine to survive, the Irish were overly dependent on the potato, and almost one million died. Many now argue that we're overly dependent on corn. Should we be relying on so few species for the bulk of our nation's food supply? A consumer can vote with his or her wallet— simply avoid highly processed foods and cook with a variety of locally grown produce.

UPDATE: Supporting local agriculture is also an effective way to reduce energy consumption (you really don't need tomatoes shipped all the way from Chile if they can instead be grown 90 miles away).

UPDATE: Although this article in New Scientist sounds a little alarmist to me, I think it's worth considering the dangers of banana monoculture before it's too late.

March 7, 2006

Creationist club at Berkeley (IDEA)

There's no escaping hatred of the scientific process. Even Berkeley now has a creationist club, although it's disguised as an "intelligent design and evolution awareness (IDEA)" group. Apparently, this club is hosting a talk by intelligent design tele-evangelist William Dembski here in a couple weeks. Dembski, you may know, is a mathematician (with little-to-no training in actual biology) who's out to prove his thesis of "specified complexity." I am predicting one of two possible scenarios:

  • It'll be an outright circus, with scientists booing, hissing, giggling and shouting out during the talk to challenge Dembski, or
  • A crowd more-or-less devoid of any real scientists.

While I almost want the former, I expect the latter. Personally, I think the finest reception Dembski deserves in Berkeley is one of indifference. In particular, there is no pressing need for biologists to be there at all, because as one of the MCB grad students said, "it's obviously not an MCB-sponsored event."

March 1, 2006

11:35 a.m. -- Earthquake in Berkeley

Fun. I just survived my first "real" earthquake. Although I've been in Berkeley for almost three years, I have only observed two small earthquakes. I didn't even recognize the one my first year as an earthquake because it just "popped." The one this morning was pretty obvious when it happened. Here's the seismograph from the USGS:

The house shook for about 1.5 seconds: glasses clinked, framed photos rattled a bit, and it shook me sitting on the sofa pretty well. I called Giao and she said it also shook the buildings on the UC campus. It's just an absolutely amazing amount of energy that's released during earthquakes. It's hard to fathom...

The USGS-UCB seismic activity page has updated its records, and they're initially estimating the quake at 3.4 local magnitude, centered just 3-4 miles from Berkeley in the Berkeley Hills. It's now a little creepy (the warning sirens are blaring, police sirens going off, etc.) I suspect it's just preventative, in case of aftershocks, but it's still a little surreal.

UPDATE: The Internet is amazing. I found the GPS coordinates for the earthquake. This Google Maps link shows just how close it was!

February 23, 2006

Photographing Berkeley: Your Waitress

I just came across local photographer Valerie Cochran's photoblog called yourwaitress.com. Check it out; the photos are mostly of Berkeley, S.F., and the Bay Area.

Absolutely gorgeous B&W photographs.

February 18, 2006

HodgesLab has moved.

This afternoon, I moved the site to its new home on the Berkeley campus. Along the way, I decided I would update Movable Type from v2.6 to v3.2. Man, what a difference. It has lots of new features, but among the most visible is the new 'tagging' feature. When I write an entry, I can select which category the entry belongs to (see the right column). Movable Type now pings the Technorati site (the 'blog search engine') and tells it that I updated my site with an entry on the topic of the selected category.

Kinda cool, it makes me wonder if I'll get any more traffic. I'll have to wait and see.

Also, of course, the site looks a little different. At first, I didn't really like the "bloggy" feel of the site, but the more I personalize it, the more it has started to grow on me...

Anyhow, there may be some minor hiccups on the site while the DNS update propagates. But hopefully not.

October 26, 2005

The drought is over.

The drought is over. Two days after the fog came rain. This is the first real day of rain in about six months; I've always found it amazing that all the plants manage to live without direct rainfall for so long.

The photo you see is Latimer Hall. It stands on the site of the original U. C. Radiation Laboratory, used by Edward Teller after WWII when he was perfecting the hydrogen bomb (see Teller-Ulam design). So right now, the site where the original fusion/fission H-bomb was designed, is being rained on. And I should be going to journal club.

The building is currently in use by the College of Chemistry for less clandestine experiments, like synthetic chemistry and Raman spectroscopy.

See also: Images from the book 100 SUNS

October 24, 2005

Foggy Mornin'.

Foggy mornin'. Well, things finally worked. I struggled for a week to figure out why I couldn't get a proper I53D mutant of RNase H. I finally figured out how much phosphate was in my PCR buffer, and quickly desalted. Now, my site-directed mutagenesis worked perfectly!

I started a series of minipreps last night, and got up early today so that I could finish the preps before the sequencing people get here at 11:00 am. Which brings me to my point. Today is the first day this fall that I've been up early enough to see the fog before it rolled back. I caught a shot of the Campanile in the fog with the ol' cell phone. This (from what I hear) is typical Berkeley, early morning.

July 18, 2005

Jason Choy, 29

Jason ChoyJason Choy, 1976-2005.

Jason Choy, my lab partner and mentor for my project, died early Saturday morning in a car accident off I-80 in Berkeley. The car he was in crashed into a semi that had crossed the median after being struck by another car. Jason was 29 years old. May he rest peacefully.







October 4, 2004

N.J. and the H.B.



The lady and I went to the Norah Jones concert last Saturday -- at UC's Greek Theatre. A great show, all in all. We heard from Dallas' Darling herself along with a chap by the name of Amos Lee. I yelled out "Booker T. Washington!!!!!!!!!!!" as loud as I could, but to no avail. No time for further discussion; check out the photos!

April 25, 2004

People's Park Anniversary



The historic People's Park had its anniversary today. Today marks 35 years to the day when The People declared this block their property instead of UC's. The National Guard was called out, there was teargas, a big ol' scene. If y'ant, you can read more about it.

Anyhow, big ol' party one block from my apartment. Craziness spilling over everywhere -- public nakedness, a band, ninjas, rides, bicycle rodeos (don't ask me), a crazy bus, PortoSan's, a band, and more!

See the pictures!

April 21, 2004

Berzerkeley Ads

So Berkeley has this great tradition of vandalizing advertisements to send a completely different message than what was originally intended. I've decided I'm going to begin documenting this, starting with today's installment.

We begin with the ad that the Department of Homeland Security has been putting out for ready.gov. The text of this originally said "Terrorism Forces us to make a choice. We can be afraid. Or we can be prepared. [Ready] 1-800-BE READY"

Then, the conspicuous McDonald's ad that everybody in the world sees coming out of the main Berkeley BART (subway) stop. This ad, perched above the Downtown Berkeley BART elevators, used to say "The feel good menu of the year." Heh.